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accession-icon GSE17810
Hepatic expression data between C57BL/6J and DBA/2J mice
  • organism-icon Mus musculus
  • sample-icon 9 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

C57BL/6J (B6) and DBA/2J (D2) mice were fed a high-fat/high-cholesterol diet in order to investigate the responses to that diet over time and their underlying genetic factors. We observed distinctly diverse responses between B6 and D2 mice, including dynamic distribution of cholesterol in serum and bile, hepatic apoptosis and dynamic formation of gallstones and atherosclerosis.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-17810

Sample Metadata Fields

Sex

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accession-icon GSE1318
Myb specificity determinants
  • organism-icon Homo sapiens
  • sample-icon 25 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133A Array (hgu133a)

Description

Recombinant adenovirus vectors were used to express wild type or domain swap mutants of A-Myb and c-Myb transcription factors in MCF-7 cells or pimary lung epithelial cells or fibroblasts. The results show that Myb proteins have extreme context specificity and identify sub-domains responsible for the activation of specific sets of target genes.

Publication Title

Positive and negative determinants of target gene specificity in myb transcription factors.

Alternate Accession IDs

E-GEOD-1318

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE2815
cMyb and vMyb in MCF7 cells
  • organism-icon Homo sapiens
  • sample-icon 7 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133A Array (hgu133a)

Description

The transcriptional activities of c-Myb and its oncogenic variant v-Myb were compared by expressing them in human MCF7 cells using recombinant adenovirus vectors. A hybrid construct, 3Mutc, which is a variant of c-Myb harboring three v-Myb-derived DNA binding domain mutations was also analyzed. All the samples were compared to cells infected with a control adenovirus. The results showed that v-Myb, which differs from c-Myb only by N- and C-terminal deletions and eleven amino acid substitutions, has a qualitatively different transcriptional activity.

Publication Title

Oncogenic mutations cause dramatic, qualitative changes in the transcriptional activity of c-Myb.

Alternate Accession IDs

E-GEOD-2815

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE2816
cMyb and vMyb in human monocytes
  • organism-icon Homo sapiens
  • sample-icon 5 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

The transcriptional activities of c-Myb and its oncogenic variant v-Myb were compared by expressing them in primary human monocytes using recombinant adenovirus vectors. All the samples were compared to cells infected with a control adenovirus expressing only GFP. The results showed that v-Myb, which differs from c-Myb only by N- and C-terminal deletions and eleven amino acid substitutions, has a qualitatively different transcriptional activity.

Publication Title

Oncogenic mutations cause dramatic, qualitative changes in the transcriptional activity of c-Myb.

Alternate Accession IDs

E-GEOD-2816

Sample Metadata Fields

No sample metadata fields

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accession-icon GSE9099
Gene Expression Changes Between 3-Month-Old Epiphycan/Biglycan Double-null and Wildtype Mice
  • organism-icon Mus musculus
  • sample-icon 3 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Expression 430A Array (moe430a)

Description

Epiphycan/Biglycan double-null mice develop age-dependant osteoarthritis. This study aims to elucidate the gene expression changes which happen early in the disease (3 Months) in order to identify possible contributors to disease devleopment and progression.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-9099

Sample Metadata Fields

No sample metadata fields

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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