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accession-icon SRP081188
Homo sapiens Transcriptome or Gene expression
  • organism-icon Homo sapiens
  • sample-icon 2 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 4000

Description

human Transcriptomehuman Transcriptomehuman Transcriptomehuman Transcriptomehuman Transcriptome

Publication Title

No associated publication

Alternate Accession IDs

None

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
accession-icon SRP106521
Transcriptome Analysis of Male Drosophila melanogaster Exposed to Ethylparaben
  • organism-icon Drosophila melanogaster
  • sample-icon 2 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 4000

Description

This study revealed the EP impact on gene expression in fruit fly and provided new insight into the mechanisms of this response, which is helpful for understanding EP toxicity to humans.

Publication Title

No associated publication

Alternate Accession IDs

None

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon SRP099312
RNAseq of Adipose tissues in VEGF and VEGFB knockout mouse models
  • organism-icon Mus musculus
  • sample-icon 10 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

VEGF and VEGFB Play Balancing Roles in Adipose Differentiation, Gene Expression and Function

Publication Title

No associated publication

Alternate Accession IDs

None

Sample Metadata Fields

Sex, Specimen part, Cell line

View Samples
accession-icon SRP194050
mouse brain and lung Transcriptome
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

gene expression study on brain and lung under Dip2a regulation to better understand the role of Dip2a gene during mice brain and lung development.

Publication Title

Large genomic fragment deletions and insertions in mouse using CRISPR/Cas9.

Alternate Accession IDs

None

Sample Metadata Fields

Sex, Specimen part, Cell line

View Samples
accession-icon GSE101941
Gene expression analysis of c-Myc overexpressing human fibroblasts.
  • organism-icon Homo sapiens
  • sample-icon 1 Downloadable Sample
  • Technology Badge Icon Affymetrix Human Gene 2.0 ST Array (hugene20st)

Description

Analysis of gene expression change of normal cells, human fore skin fibroblast (HFFs) upon over-expression of c-Myc

Publication Title

Oncogene-induced senescence mediated by c-Myc requires USP10 dependent deubiquitination and stabilization of p14ARF.

Alternate Accession IDs

E-GEOD-101941

Sample Metadata Fields

Cell line

View Samples
accession-icon GSE64030
Comparative transcriptome analysis of wheat embryo and endosperm response to ABA and H2O2 stresses during seed germination
  • organism-icon Triticum aestivum
  • sample-icon 17 Downloadable Samples
  • Technology Badge Icon Affymetrix Wheat Genome Array (wheat)

Description

Wheat seed germination directly affects wheat yield and quality. The wheat grains mainly include embryo and endosperm, and both play important roles in seed germination, seedling survival and subsequent vegetative growth. ABA can positively regulate dormancy induction and then negatively regulates seed germination at low concentrations. H2O2 treatment with low concentration can promote seed germination of cereal plants. Although various transcriptomics and proteomics approaches have been used to investigate the seed germination mechanisms and response to various abiotic stresses in different plant species, an integrative transcriptome analysis of wheat embryo and endosperm response to ABA and H2O2 stresses has not reported so far. We used the elite Chinese bread wheat cultivar Zhenmai 9023 as material and performed the first comparative transcriptome microarray analysis between embryo and endosperm response to ABA and H2O2 treatments during seed germination using the GeneChip Wheat Genome Array

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-64030

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE49821
Transcriptome analysis during seed germination of elite Chinese bread wheat cultivar Jimai 20
  • organism-icon Triticum aestivum
  • sample-icon 14 Downloadable Samples
  • Technology Badge Icon Affymetrix Wheat Genome Array (wheat)

Description

Wheat seed germination is highly related to seedling survival rate and subsequent vegetative growth,and therefore directly affects the conformation of wheat yield and quality. So wheat seed germination is not only important to itself, but the whole human society. However, due to the large genome size, many studies related to wheat seed are very complex and uncompleted. Transcriptome analysis of elite Chinese bread wheat cultivar Jimai 20 may provides a comprehensive understanding of wheat seed germination.

Publication Title

Transcriptome analysis during seed germination of elite Chinese bread wheat cultivar Jimai 20.

Alternate Accession IDs

E-GEOD-49821

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE75561
Transcriptome analysis reveals key differentially expressed genes involved in wheat grain development.
  • organism-icon Triticum aestivum
  • sample-icon 9 Downloadable Samples
  • Technology Badge Icon Affymetrix Wheat Genome Array (wheat)

Description

Wheat seed development is a very important stage in the cereal crops seed life cycle. The accumulation reserves of wheat mature seeds provide not only the food for human and livestock feed, but also the energy for the seed germination.However, due to the large genome size, many studies related to wheat seed are very complex and uncompleted. Transcriptome analysis of elite Chinses bread wheat cultivar Jimai 20 may provides a comprehensive understanding of wheat seed development.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-75561

Sample Metadata Fields

Specimen part

View Samples
accession-icon SRP169871
Changed gene expression in mouse LGN and MGB induced by visual deprivation
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge IconNextSeq 500

Description

Transcriptome was performed to reveal the gene expression change in mouse thalamic LGN and MGB after visual deprivation throughing one-week dark exposure from postnatal day 21 to 28 day.

Publication Title

No associated publication

Alternate Accession IDs

None

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon SRP213298
Homo sapiens Transcriptome or Gene expression
  • organism-icon Homo sapiens
  • sample-icon 6 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

Analysis of the molecular mechanism through which Rh2 promotes cancer cell apoptosis at the transcriptome level.

Publication Title

No associated publication

Alternate Accession IDs

None

Sample Metadata Fields

Sex, Specimen part

View Samples
...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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