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accession-icon GSE20854
EGFR Isoforms and Gene Regulation in Human Endometrial Cancer Cells
  • organism-icon Homo sapiens
  • sample-icon 24 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Microarrays were used to analyze differential gene expression and to help determine the efficacy of Iressa (gefitinib), a tyrosine kinase inhibitor, on endometrial cancer cells.

Publication Title

EGFR isoforms and gene regulation in human endometrial cancer cells.

Alternate Accession IDs

E-GEOD-20854

Sample Metadata Fields

Specimen part, Cell line

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accession-icon GSE29759
The Role of microRNAs in Neural Stem Cell-supported Endothelial Morphogenesis
  • organism-icon Mus musculus
  • sample-icon 24 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

MicroRNA microarrays and RNA expression arrays were used to identify functional signaling between neural stem cell progenitor cells (NSPC) and brain endothelial cells (EC) that are critical during embryonic development and tissue repair following brain injury.

Publication Title

The role of microRNAs in neural stem cell-supported endothelial morphogenesis.

Alternate Accession IDs

E-GEOD-29759

Sample Metadata Fields

Specimen part, Disease, Treatment

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accession-icon GSE18235
Effect of 10 Cigarette Smoke Condensates on Primary Human Airway Epithelial Cells
  • organism-icon Homo sapiens
  • sample-icon 21 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Nine cigarette smoke condensates (CSCs) were produced under a standard ISO smoking machine regimen and one was produced by a more intense smoking machine regimen. These CSCs were used to treat primary normal human bronchial epithelial cells for 18 hours.

Publication Title

Effects of 10 cigarette smoke condensates on primary human airway epithelial cells by comparative gene and cytokine expression studies.

Alternate Accession IDs

E-GEOD-18235

Sample Metadata Fields

Specimen part

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accession-icon GSE18195
Effects of bevacizumab (avastin) in mouse model of endometrial cancer
  • organism-icon Homo sapiens
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Microarrays were used to determine the efficacy of bevacizumab (a monoclonal antibody against the vascular endothelial growth factor and its receptors.) on endometrial cancer cells.

Publication Title

Effects of bevacizumab in mouse model of endometrial cancer: Defining the molecular basis for resistance.

Alternate Accession IDs

E-GEOD-18195

Sample Metadata Fields

Specimen part

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accession-icon GSE11877
Children's Oncology Group Study 9906 for High-Risk Pediatric ALL
  • organism-icon Homo sapiens
  • sample-icon 193 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

PAPER 1:"Identification of novel subgroups of high-risk pediatric precursor B acute lymphoblastic leukemia (B-ALL) by unsupervised microarray analysis: clinical correlates and therapeutic implications. A Children's Oncology Group (COG) study."

Publication Title

Gene expression classifiers for relapse-free survival and minimal residual disease improve risk classification and outcome prediction in pediatric B-precursor acute lymphoblastic leukemia.

Alternate Accession IDs

E-GEOD-11877

Sample Metadata Fields

Sex, Specimen part, Race

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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