Transposons in maize may be involved in the formation of circRNAs and further modulate phenotypic variation. To test our hypothesis, we performed circRNA-Seq(RNase R treated) on B73 seedlings(third leaves of V3 stage), and uncovered 1,572 high-confidence maize circRNAs, which show distinct genomic features compared to linear transcripts. Comprehensive analyses showed that LINE1-like elements (LLE) and their reverse complementary pairs (RCPLLEs) are significantly enriched in the flanking regions of circRNAs.
Circular RNAs mediated by transposons are associated with transcriptomic and phenotypic variation in maize.
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Specimen part, Disease
View SamplesRNA-seq was performed on human PBMCs subjected to 0.004% and 0.04% cigarette smoke condensate to examine changes in gene expression levels.
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No sample metadata fields
View SamplesTranscriptomic analysis of BnLATE-regulated pathways to investigate the genome-wide effects of BnLATE overexpression on transcription
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Specimen part
View SamplesThis study is aimed to compare the gene expression between wild type and 35S:6MYC-HARP1 in response to wounding treatment.
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Age, Specimen part, Treatment
View SamplesOverexpression of the novel Arabidopsis gene At5g02890
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Specimen part
View SamplesThis study presented the differentially expressed genes post maize infected by Rhizoctonia solani.
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Specimen part
View SamplesSex condition has been demonstrated to alter meat quality and sex is a major factor that affects the fatty acid composition of lipids of carcass dissectible or intramuscular depot fats. But the possible genetic molecular mechanism of gender causing meat quality differences is not well defined. Qinchuan cattle, Qinghai yak and Guangxi buffalo are three typical indigenous species of cattle in China. Obivious differences of meat quality exist among the three species of cattle. Few studies have been conducted to elucidate the muscle tissue expression of genes involved in pathways and mechanisms leading to meat quality differences beyond the phenotype properties of beef.
No associated publication
Sex, Age, Specimen part
View SamplesIllumina/Solexa sequencing of CG3985 mutant and wildtype testes transcriptome (0-1 day males)
A young Drosophila duplicate gene plays essential roles in spermatogenesis by regulating several Y-linked male fertility genes.
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No sample metadata fields
View SamplesThe placenta has shown morphological and functional adaption in Meishan and Yorkshire pig breeds during late gestation. While the vast difference of uterine capacity and conceptus genotype between Western and Chinese pig breeds affects the pattern of placental development. Whether the placenta within Chinese pig breed also has similar adaptive changes is still unknown. So, we measured the weight and area of 80 Chinese indigenous Diannan small-ear pig placentas and further selected 6 placentas from extremely high and low litter size groups (HL and LL) for deep RNA-sequencing to detect the molecular basis relate to the observed placental phenotype difference.
No associated publication
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Sex, Specimen part
View SamplesIdentification of circular RNAs in zebrafish
Identification and characterization of circular RNAs in zebrafish.
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No sample metadata fields
View Samples