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Glycine max
5 Downloadable Samples
Illumina Genome Analyzer IIx
Description
Soybean (Peking c.v) roots.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Specimen part
View Samples- Glycine max
- 4 Downloadable Samples
- Illumina Genome Analyzer IIx
Description
Primary leaves of three-weeks-old soybean plants cultivar Williams 82 were inoculated with a Mississippi isolate of Phakopsora pachyrhizi (MS06-1). The first trifoliate leaves were collected 15 seconds after inoculation, used as a time-zero, and 10 days after inoculation. RNA was isolated and extracted from the infected leaves and cDNA libraries were constructed. cDNA was then sequenced on an Illumina platform.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
No sample metadata fields
View Samples- Glycine max
- 2 Downloadable Samples
- Illumina Genome Analyzer IIx
Description
Two week old soybean roots treated with a liquid medium containing only jasmonic acid.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Age
View Samples- Glycine max
- 2 Downloadable Samples
- Illumina Genome Analyzer IIx
Description
Primary leaves of three-weeks-old soybean plants cultivar Williams 82 were inoculated with a Mississippi isolate of Phakopsora pachyrhizi (MS06-1). The first trifoliate leaves were collected 15 seconds after inoculation, used as a time-zero, and 10 days after inoculation. RNA was isolated and extracted from the infected leaves and cDNA libraries were constructed. cDNA was then sequenced on an Illumina platform. Reads in this study did not map to the Glycine max genome.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
No sample metadata fields
View Samples- Glycine max
- 2 Downloadable Samples
- Illumina Genome Analyzer IIx
Description
Two week old soybean roots grown in a dark setting and not treated with any phytohormone.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Age
View Samples- Glycine max
- 2 Downloadable Samples
- Illumina Genome Analyzer IIx
Description
Two week old soybean roots treated with a liquid medium containing only indole-3-acetic acid (IAA)
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Age
View Samples- Glycine max
- 1 Downloadable Sample
- Illumina Genome Analyzer IIx
Description
Two week old soybean roots treated with a liquid medium containing only ethylene (ETH).
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Age
View Samples
SRP011480- Zea mays
- 92 Downloadable Samples
- Illumina HiSeq 2000, Illumina Genome Analyzer IIx
Description
Maize exhibits levels of structural variation (SV) of non-repeat sequences that are unprecedented among higher eukaryotes. This SV includes hundreds of copy number variants (CNVs) and thousands of presence/absence variants (PAVs). Many of the PAVs contain intact, expressed, single-copy genes that are present in one haplotype but absent from another. The goal of this project is to test the hypothesis that differences in gene copy number (both gains and losses) contribute to the extraordinary phenotypic diversity and plasticity of maize. Maize is a good model for these studies because it exhibits a rapid decay of linkage disequilibrium (LD) and because a draft genome sequence of the B73 inbred and mapping populations are available. As a first step, the "Zeanome", a near-complete set of genes present in B73, other maize lines and the wild ancestor of maize (teosinte), is being defined using transcriptomic data.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
No sample metadata fields
View Samples- Saccharomyces cerevisiae
- 83 Downloadable Samples
- Illumina HiSeq 2000
Description
No description.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Cell line
View Samples- Mus musculus
- 74 Downloadable Samples
- Illumina HiSeq 2500
Description
RNA-seq transcriptome profiles of genetically fate-mapped serotonin neurons, manually sorted from multiple anatomic domains, at both population and single cell resolution.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Sex, Specimen part, Cell line
View Samples