Soybean (Peking c.v) roots.
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Specimen part
View SamplesPrimary leaves of three-weeks-old soybean plants cultivar Williams 82 were inoculated with a Mississippi isolate of Phakopsora pachyrhizi (MS06-1). The first trifoliate leaves were collected 15 seconds after inoculation, used as a time-zero, and 10 days after inoculation. RNA was isolated and extracted from the infected leaves and cDNA libraries were constructed. cDNA was then sequenced on an Illumina platform.
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View SamplesTwo week old soybean roots treated with a liquid medium containing only jasmonic acid.
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Age
View SamplesPrimary leaves of three-weeks-old soybean plants cultivar Williams 82 were inoculated with a Mississippi isolate of Phakopsora pachyrhizi (MS06-1). The first trifoliate leaves were collected 15 seconds after inoculation, used as a time-zero, and 10 days after inoculation. RNA was isolated and extracted from the infected leaves and cDNA libraries were constructed. cDNA was then sequenced on an Illumina platform. Reads in this study did not map to the Glycine max genome.
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No sample metadata fields
View SamplesTwo week old soybean roots grown in a dark setting and not treated with any phytohormone.
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Age
View SamplesTwo week old soybean roots treated with a liquid medium containing only indole-3-acetic acid (IAA)
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Age
View SamplesTwo week old soybean roots treated with a liquid medium containing only ethylene (ETH).
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Age
View SamplesMaize exhibits levels of structural variation (SV) of non-repeat sequences that are unprecedented among higher eukaryotes. This SV includes hundreds of copy number variants (CNVs) and thousands of presence/absence variants (PAVs). Many of the PAVs contain intact, expressed, single-copy genes that are present in one haplotype but absent from another. The goal of this project is to test the hypothesis that differences in gene copy number (both gains and losses) contribute to the extraordinary phenotypic diversity and plasticity of maize. Maize is a good model for these studies because it exhibits a rapid decay of linkage disequilibrium (LD) and because a draft genome sequence of the B73 inbred and mapping populations are available. As a first step, the "Zeanome", a near-complete set of genes present in B73, other maize lines and the wild ancestor of maize (teosinte), is being defined using transcriptomic data.
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View SamplesNo description.
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Cell line
View SamplesRNA-seq transcriptome profiles of genetically fate-mapped serotonin neurons, manually sorted from multiple anatomic domains, at both population and single cell resolution.
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Sex, Specimen part, Cell line
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