Effect of IPMS (BatIMS) overexpression on Arabidopsis thaliana.
Expression of a Brassica isopropylmalate synthase gene in Arabidopsis perturbs both glucosinolate and amino acid metabolism.
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Age, Specimen part
View Samples1. To identify lncRNA regulating colorectal tumorigenesis, we performed RNA-seq analysis of cells with high and low tumorigenicity 2. To study the role of UPAT in colorectal cancer cells, we investigated the gene expression profiles of HCT116 cells in which UPAT expression had been suppressed by siRNA.
No associated publication
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Cell line
View SamplesThis study is aimed to compare the gene expression between wild type and 35S:6MYC-HARP1 in response to wounding treatment.
No associated publication
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Age, Specimen part, Treatment
View SamplesTransposons in maize may be involved in the formation of circRNAs and further modulate phenotypic variation. To test our hypothesis, we performed circRNA-Seq(RNase R treated) on B73 seedlings(third leaves of V3 stage), and uncovered 1,572 high-confidence maize circRNAs, which show distinct genomic features compared to linear transcripts. Comprehensive analyses showed that LINE1-like elements (LLE) and their reverse complementary pairs (RCPLLEs) are significantly enriched in the flanking regions of circRNAs.
Circular RNAs mediated by transposons are associated with transcriptomic and phenotypic variation in maize.
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Specimen part, Disease
View SamplesCharacterization of circular RNAs in Ovarian cancer
No associated publication
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No sample metadata fields
View SamplesIllumina/Solexa sequencing of CG3985 mutant and wildtype testes transcriptome (0-1 day males)
A young Drosophila duplicate gene plays essential roles in spermatogenesis by regulating several Y-linked male fertility genes.
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No sample metadata fields
View SamplesThe placenta has shown morphological and functional adaption in Meishan and Yorkshire pig breeds during late gestation. While the vast difference of uterine capacity and conceptus genotype between Western and Chinese pig breeds affects the pattern of placental development. Whether the placenta within Chinese pig breed also has similar adaptive changes is still unknown. So, we measured the weight and area of 80 Chinese indigenous Diannan small-ear pig placentas and further selected 6 placentas from extremely high and low litter size groups (HL and LL) for deep RNA-sequencing to detect the molecular basis relate to the observed placental phenotype difference.
No associated publication
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Sex, Specimen part
View SamplesWe used microarrays to detail the global program of gene expression under berberine treatment in 3T3-L1 adipocytes
Berberine attenuates autophagy in adipocytes by targeting BECN1.
Cell line, Time
View SamplesGene expression profile of 91 human subjects at various stages of non-alcoholic steatohepatitis.
No associated publication
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Sex, Age, Specimen part
View SamplesComparison of hippocampal gene expression between normal young animals and older animals with good spatial memory and older animals with poor spatial memory
No associated publication
No sample metadata fields
View Samples