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SRP064329
Homo sapiens
22 Downloadable Samples
IlluminaHiSeq2000
Description
RNA-seq on both undepleted and mtDNA-depleted HSR-GBM1 and U266 cells and tumours
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
No sample metadata fields
View Samples- Danio rerio
- 18 Downloadable Samples
- IlluminaGenomeAnalyzerIIx
Description
To investigate the transcriptional regulation in zebrafish liver during the process of regeneration after 1/9 PH
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
No sample metadata fields
View Samples- Danio rerio
- 17 Downloadable Samples
- IlluminaGenomeAnalyzerIIx
Description
To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses, larvae at 96hpf were exposed to cold stress (16 Celsius degree) or hypoxia (5% O2) for 24h, and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. After environmental exposure, RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
No sample metadata fields
View Samples- Danio rerio
- 3 Downloadable Samples
- IlluminaGenomeAnalyzerIIx
Description
To investigate the transcriptional regulation in zebrafish liver during the process of regeneration after 1/3 PH
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
No sample metadata fields
View Samples- Gallus gallus
- 4 Downloadable Samples
Affymetrix Chicken Genome Array (chicken)
Description
Transgenerational effects of early experience on behavioural, hormonal and gene expression responses to acute stress in the precocial chicken. The data for the parental stressed and control birds is available in ArrayExpress with accession E-MTAB-924, while this experiment only concerns their offspring that never been exposed to early life stress.
Publication Title
Transgenerational effects of early experience on behavioural, hormonal and gene expression responses to acute stress in the precocial chicken
Alternate Accession IDs
None
Sample Metadata Fields
Sex, Specimen part, Treatment
View Samples- Drosophila melanogaster
- 5 Downloadable Samples
- Illumina HiSeq 4000
Description
We sequenced DGRP (Drosophila Genetic Reference Panel) line 208 for strand-specific RNA-seq in head, testis and ovary. The RNA-seq (2x150bp) data is intended to investigate the expression profiles of polymorphic duplications and de novo gene, as well as other lncRNAs.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Sex, Specimen part, Cell line
View Samples- Drosophila melanogaster
- 3 Downloadable Samples
- Illumina HiSeq 2000
Description
Deep Sequencing Reveals the Transcriptomic Response to UVA Radiation in the Heads of Drosophila melanogaster (Diptera: Drosophilidae)
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Sex, Age, Specimen part, Cell line, Treatment
View Samples- Homo sapiens
- 16 Downloadable Samples
- Illumina HiSeq 4000
Description
RNA was isolated from colorectal cancer (HCT116) and normal colon cells (HCoEpic) treated with toxic agents (bisphenol A (BPA), hexabromocyclododecane (HBCD), 4-tert-octylphenol (OP)) or Vehicle (DMSO) and then preformed NGS using Illumina protocol.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Sex, Specimen part, Disease, Cell line, Treatment
View Samples- Zea mays
- 41 Downloadable Samples
- Illumina HiSeq 4000
Description
Senescence has tremendous impact on yield and nutritional quality of agricultural produce. However, scant information is available on genetic architecture of senescence in maize (Zea mays L.) despite the importance of stay-green, a delayed senescence phenotype, in this major cereal crop. We combined different approaches including co-expression networks derived from time-course transcriptome analysis of senescence and stay-green to identify unique candidate genes.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Specimen part
View Samples- Danio rerio
- 2 Downloadable Samples
- Illumina HiSeq 2500
Description
Determination of the genes that can be important for the defense of the host to infection for Mucorales fungi, using zebrafish and the fungus Mucor circinelloides as host and pathogen model, respectively. Total RNA was sequenced (RNA-seq) from abdominal organs of infected fish.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Sex, Specimen part, Cell line, Treatment
View Samples