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SRP173569
Pseudomonas aeruginosa
4 Downloadable Samples
Illumina HiSeq 4000
Description
Pseudomonas aeruginosa transcriptomic profile exposed to Cr(VI)
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Specimen part, Disease
View Samples- Glycine max
- 12 Downloadable Samples
- Illumina HiSeq 2000
Description
Soybean transcript fluctuations were observed in response to Rhizoctonia solani AG-1 IA causing Rhizoctonia foliar blight. The overall goal was to observe the general transcriptome fluctuations using RNAseq Illumina HiSeq analysis.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Specimen part, Disease
View Samples- Zea mays
- 42 Downloadable Samples
- Illumina HiSeq 2000
Description
This study was designed to identify root specific transcriptome variation that occurs across genotypically diverse maize lines.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Age, Specimen part, Disease
View Samples- Arabidopsis thaliana
- 6 Downloadable Samples
Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)
Description
Comparing the gene expression patterns between wild type plant (Col-0) and MYB Over-expression plants.
Publication Title
Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis.
Alternate Accession IDs
None
Sample Metadata Fields
No sample metadata fields
View Samples- Arabidopsis thaliana
- 4 Downloadable Samples
- Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)
Description
Single mutant msh1
Publication Title
Extensive rearrangement of the Arabidopsis mitochondrial genome elicits cellular conditions for thermotolerance.
Alternate Accession IDs
None
Sample Metadata Fields
No sample metadata fields
View Samples- Arabidopsis thaliana
- 4 Downloadable Samples
- Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)
Description
Double mutant msh1 and recA3
Publication Title
Extensive rearrangement of the Arabidopsis mitochondrial genome elicits cellular conditions for thermotolerance.
Alternate Accession IDs
None
Sample Metadata Fields
No sample metadata fields
View Samples- Glycine max
- 120 Downloadable Samples
- Affymetrix Soybean Genome Array (soybean)
Description
Expression profiling in Rpp2-resistant (PI230970) and susceptible (Embrapa-48) plant lines to soybean rust from infection to symptom development
Publication Title
Distinct Biphasic mRNA Changes in Response to Asian Soybean Rust Infection
Alternate Accession IDs
None
Sample Metadata Fields
Specimen part, Time
View Samples- Gallus gallus
- 7 Downloadable Samples
- Illumina HiSeq 2000
Description
The goal of this study is to obtain the transcriptomes of chicken magnum in different natural developmental stages. There are totally five stages researched in this study and they are named D1, D2, D3, D4 and L. D1 to D4 are the abbreviations of developmental stage 1 to developmental stage 4 and L means laying stage. D1 refers to the lag phase (about 7 weeks old) in which the magnum has very slight change; D2 refers to the early proliferation phase (about 13 weeks old); D3 refers to the late proliferation phase (about 16 weeks old); D4 refers to the early differentiation phase (about 17 weeks old).
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Age
View Samples- Gallus gallus
- 6 Downloadable Samples
- Illumina HiSeq 2500
Description
In the experiment, we took a chinese chicken with different body weights at 300 days as the research subjects. The chickens were divided into fast- and slow-growing groups (high body weight and low body weight). We selected leg muscles after slaughtering and used then for RNA-seq. Finally, we screened differentially expressed genes and the corresponding enriched pathways related to growth through a bioinformatics analysis. The results provide a theoretical foundation for revealing the molecular mechanism of the growth for chickens and improving the production performance of the Jinghai yellow chicken.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Sex, Specimen part
View Samples- Sus scrofa
- 6 Downloadable Samples
- Illumina HiSeq 2000
Description
Backfat thickness traits are strongly associated with meat quality, fattening efficiency, reproductive performance, and immunity in pigs. Fat storage and fatty acid synthesis mainly occur in adipose tissue. Therefore, we used a high-throughput massively parallel sequencing approach to identify transcriptomes in adipose tissue from three full-sibling pairs of pigs with opposite (high and low) backfat thickness phenotypes.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Sex, Age, Specimen part
View Samples