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accession-icon GSE29318
Expression profile of FAC-sorted murine retinal cells
  • organism-icon Mus musculus
  • sample-icon 9 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Microarray experiments were performed using FAC-sorted young photoreceptors to analyze their transcriptome in comparison to remaining retinal cells at same developmental stage and retinal progenitors.

Publication Title

Increased integration of transplanted CD73-positive photoreceptor precursors into adult mouse retina.

Alternate Accession IDs

E-GEOD-29318

Sample Metadata Fields

Specimen part

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accession-icon GSE59202
Fluorochrome-based definition of naturally occurring Foxp3+ regulatory T cells of intra- and extrathymic origin
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Here, we report on experiments in double-transgenic mice, in which RFP is expressed in all Foxp3+ Treg cells, whereas Foxp3-dependent GFP expression is exclusively confined to intrathymically induced Foxp3+ Treg cells. This novel molecular genetic tool enabled us to faithfully track and characterize naturally induced Treg cells of intrathymic (RFP+GFP+) and extrathymic (RFP+GFP) origin in otherwise unmanipulated mice.

Publication Title

Fluorochrome-based definition of naturally occurring Foxp3(+) regulatory T cells of intra- and extrathymic origin.

Alternate Accession IDs

E-GEOD-59202

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE44126
Expression data from Human CD40L+ Tcells
  • organism-icon Homo sapiens
  • sample-icon 5 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

To assess the nature of CD8+CD40L+ memory Tcells, we compared the gene expression to CD8+CD40L- and CD4+ counterparts, and found similarities in expression of genes encoding cytokines

Publication Title

CD40L expression permits CD8+ T cells to execute immunologic helper functions.

Alternate Accession IDs

E-GEOD-44126

Sample Metadata Fields

Sex, Specimen part

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accession-icon GSE26339
Expression data from pericardial and subcutaneous adipose tissue and adipocytes
  • organism-icon Homo sapiens
  • sample-icon 49 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

To better characterize the role of whole pericardial adipose tissue (PCAT) in the pathogenesis of disease, we performed a large-scale unbiased analysis of the transcriptional differences between pericardial and subcutaneous adipose tissue, analysing 53 microarrays across 19 individuals.

Publication Title

Pattern specification and immune response transcriptional signatures of pericardial and subcutaneous adipose tissue.

Alternate Accession IDs

E-GEOD-26339

Sample Metadata Fields

Specimen part, Subject

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accession-icon SRP071762
Mus musculus Transcriptome or Gene expression
  • organism-icon Mus musculus
  • sample-icon 14 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

The goal of this study is to understand transcriptome state in blastocyst of mice.

Publication Title

No associated publication

Alternate Accession IDs

None

Sample Metadata Fields

Sex, Specimen part, Cell line

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accession-icon SRP068485
Mus musculus Transcriptome or Gene expression
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

The study goal is to understand the gene function in preimplantation development.

Publication Title

No associated publication

Alternate Accession IDs

None

Sample Metadata Fields

Sex, Specimen part, Cell line

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accession-icon GSE35820
Expression Analysis of Macrodactyly
  • organism-icon Homo sapiens
  • sample-icon 3 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Macrodactyly is a rare family of congenital disorders characterized by the diffuse enlargement of 1 or more digits. To date, no genes or loci have been implicated in the development of macrodactyly. In this study, we performed the first transcriptional profiling of macrodactyly tissue.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-35820

Sample Metadata Fields

Specimen part

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accession-icon GSE80070
Whole transcript expression profiling of short-term and long-term hypoxic neural stem cells (NSCs)
  • organism-icon Mus musculus
  • sample-icon 24 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

Transcriptome analysis of murine foetal NSCs (E14) after short-term (48 hours) and long-term (13 days) hypoxic (3% oxygen) culture compared to normoxic culture (21% oxygen)

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-80070

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE36687
Microarray of Rnaseh2b KOF and RnaseH2b wild type fetal liver
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Fetal liver of E14.5 RNaseh2b KOF and Rnaseh2b wild type embryos was isolated, RNA was extracted and microarray analysis using Affymetrix Mouse 430 2.0 gene chip was performed

Publication Title

Mammalian RNase H2 removes ribonucleotides from DNA to maintain genome integrity.

Alternate Accession IDs

E-GEOD-36687

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE49680
Expression analysis of LM8 osteosarcoma cells overexpressing human Prolyl Hydroxylase Domain Protein-4 (PHD4) and LM8 control cells
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Expression 430A Array (moe430a)

Description

PHD4 regulates the expression of Hypxia-inducible Factor 2 (HIF-2) alpha in LM8 osteosarcoma cells. PHD4 overexpression inhibits the growth of experimental tumor in syngenic mice but stimulates angiogenesis via Transforming Growth-Factor (TGF)-alpha.

Publication Title

PHD4 stimulates tumor angiogenesis in osteosarcoma cells via TGF-α.

Alternate Accession IDs

E-GEOD-49680

Sample Metadata Fields

Cell line, Treatment

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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