GmMEKK1 silencing was performed in Glycine max (Williams 82) using virus-induced gene silencing (VIGS) mediated by Bean pod mottle virus (BPMV). Rna-Seq was performed to compare the transcriptional profile of GmMEKK1-silenced plants to vector control plants.
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Age, Specimen part, Disease, Treatment
View SamplesVirus induced gene silencing coupled with RNA-seq was used to identify genes in the Rpp1 signaling network
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None
Age, Specimen part, Disease, Treatment
View SamplesK562 single cell RNA-seq study
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None
No sample metadata fields
View SamplesThe SCH9 null strain has smaller cell size, grows at a slower rate and survives three times longer than wide-type yeast.
Comparative analyses of time-course gene expression profiles of the long-lived sch9Delta mutant.
Age
View SamplesThe three yeast mutants sch9, ras2, tor1 show extended chronological life span up to three folds.
Significant and systematic expression differentiation in long-lived yeast strains.
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View SamplesThis project aims to discover canonical gene fusion events from mixed human tissue cell lines.
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None
No sample metadata fields
View SamplesIn order to identify eQTL in developing seeds of Arabidopsis thaliana 116 Arabidopsis thaliana recombinant inbred lines (C24/Col 0 and Col 0/C24, Trjk et al. 2006) were analysed.
No associated publication
Specimen part
View SamplesNitrogen availability in the soil is a major determinant of crop yield. While the application of fertilizer can substantially increase the yield on poor soils, it also causes nitrate pollution of water resources and high costs for farmers. Increasing the nitrogen use efficiency in crop plants is a necessary step to implement low input agricultural systems. We exploited the genetic diversity present in the world-wide Arabidopsis thaliana population to study adaptive growth patterns and changes in gene expression associated with chronic low nitrate stress, with the aim to identify biomarkers associated with good plant performance under low nitrate availability.
No associated publication
Age, Specimen part, Treatment
View SamplesThis SuperSeries is composed of the SubSeries listed below.
Tailoring high-density oligonucleotide arrays for transcript profiling of different Arabidopsis thaliana accessions using a sequence-based approach.
Specimen part
View SamplesIn order to identify differentially expressed genes in developing seeds of Arabidopsis thaliana three different stages of seed development were analysed (9-10, 10-11 and 12-13 days after flower opening) for two Arabidopsis thaliana accessions, Col-0 and C24. For each stage and accession three biological replicates were analysed.
Tailoring high-density oligonucleotide arrays for transcript profiling of different Arabidopsis thaliana accessions using a sequence-based approach.
Specimen part
View Samples