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Homo sapiens
2 Downloadable Samples
Illumina HiSeq 4000
Description
human
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Sex, Age, Specimen part
View Samples
SRP108540- Glycine max
- 35 Downloadable Samples
- Illumina HiSeq 2000
Description
Transcriptome sequencing to identify differentially expressed transcripts in roots of iron deficiency chlorosis tolerant line U06-105454 and iron deficiency chlorosis sensitive line U06-625083 with low iron and alkaline treatments
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Age, Specimen part, Treatment
View Samples- Arabidopsis thaliana
- 7 Downloadable Samples
Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)
Description
RNA prepared from specialized replum cells within siliques provided targets for profiling the Arabidopsis genome during replum cell development.
Publication Title
Laser capture microdissection of plant cells from tape-transferred paraffin sections promotes recovery of structurally intact RNA for global gene profiling.
Alternate Accession IDs
None
Sample Metadata Fields
Specimen part
View Samples SRP136224- Danio rerio
- 12 Downloadable Samples
- IlluminaHiSeq2500
Description
To reveal the toxic mechanism of thifluzamide in zebrafish
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
No sample metadata fields
View Samples SRP115073- Danio rerio
- 1 Downloadable Sample
- Illumina HiSeq 2500
Description
The study was to unravel the complex toxic effects of chemical contaminants on the health of organisms as based on different levels of biological profling.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Sex, Specimen part, Cell line
View Samples- Gallus gallus
- 7 Downloadable Samples
- Illumina HiSeq 2000
Description
The goal of this study is to obtain the transcriptomes of chicken magnum in different natural developmental stages. There are totally five stages researched in this study and they are named D1, D2, D3, D4 and L. D1 to D4 are the abbreviations of developmental stage 1 to developmental stage 4 and L means laying stage. D1 refers to the lag phase (about 7 weeks old) in which the magnum has very slight change; D2 refers to the early proliferation phase (about 13 weeks old); D3 refers to the late proliferation phase (about 16 weeks old); D4 refers to the early differentiation phase (about 17 weeks old).
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Age
View Samples- Homo sapiens
- 1 Downloadable Sample
- Affymetrix Human Gene 2.0 ST Array (hugene20st)
Description
Analysis of gene expression change of normal cells, human fore skin fibroblast (HFFs) upon over-expression of c-Myc
Publication Title
Oncogene-induced senescence mediated by c-Myc requires USP10 dependent deubiquitination and stabilization of p14ARF.
Alternate Accession IDs
Sample Metadata Fields
Cell line
View Samples- Gallus gallus
- 6 Downloadable Samples
- Illumina HiSeq 2500
Description
In the experiment, we took a chinese chicken with different body weights at 300 days as the research subjects. The chickens were divided into fast- and slow-growing groups (high body weight and low body weight). We selected leg muscles after slaughtering and used then for RNA-seq. Finally, we screened differentially expressed genes and the corresponding enriched pathways related to growth through a bioinformatics analysis. The results provide a theoretical foundation for revealing the molecular mechanism of the growth for chickens and improving the production performance of the Jinghai yellow chicken.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Sex, Specimen part
View Samples- Sus scrofa
- 6 Downloadable Samples
- Illumina HiSeq 2000
Description
Backfat thickness traits are strongly associated with meat quality, fattening efficiency, reproductive performance, and immunity in pigs. Fat storage and fatty acid synthesis mainly occur in adipose tissue. Therefore, we used a high-throughput massively parallel sequencing approach to identify transcriptomes in adipose tissue from three full-sibling pairs of pigs with opposite (high and low) backfat thickness phenotypes.
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Sex, Age, Specimen part
View Samples SRP174379- Ovis aries
- 6 Downloadable Samples
- Illumina HiSeq 2000
Description
In order to indentify and screen the differentially expressed genes in meat sheep mammary tissues between healthy and naturally infected with clinical mastitis
Publication Title
No associated publication
Alternate Accession IDs
None
Sample Metadata Fields
Sex, Specimen part
View Samples