refine.bio
  • Search
      • Normalized Compendia
      • RNA-seq Sample Compendia
  • Docs
  • About
  • My Dataset
github link
Showing
of 3434 results
Sort by

Filters

Organism

Technology

Platform

accession-icon GSE36228
Affymetrix Cotton Genome array expression data of cotton fiber at different developmental stages from different varieties of Gossypium hirsutum
  • organism-icon Gossypium hirsutum
  • sample-icon 89 Downloadable Samples
  • Technology Badge Icon Affymetrix Cotton Genome Array (cotton)

Description

Cotton fiber were used for the expression analysis at different developmental stages

Publication Title

Transcriptome dynamics during fibre development in contrasting genotypes of Gossypium hirsutum L.

Alternate Accession IDs

E-GEOD-36228

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE45690
Functional characterization of Taf4b in Arabidopsis thaliana
  • organism-icon Arabidopsis thaliana
  • sample-icon 34 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

Expression analysis was performed with two TDNA insertion mutants of taf4b i.e; taf4bprm (TDNA insertion in promoter region) and taf4bint (TDNA insertion in intronic region), Taf4b overexpression lines, taf4bprmcpr5 double mutant lines (Double mutant was generated by crossing taf4bprm with cpr5) and Col-0 in normal condition as well as with taf4bprm mutant and Col-0 infected with fungi AB (Alternaria brassicicola) and bacteria ES4 (Pseudomonas syringae pv.maculicola ES4326 ) in different perspectives.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-45690

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE53564
Effect of As (V) 50m in transcription change of six rice genotypes (BRG-12, BRG-15, BRG-20, CN1646-5, NAYANMONI and CN1646-2)
  • organism-icon Oryza sativa indica group
  • sample-icon 29 Downloadable Samples
  • Technology Badge Icon Affymetrix Rice Genome Array (rice)

Description

Affymetrix expression analysis was used to check transcipt expression in As (V) stress.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-53564

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE40061
Role of CAMTA1 gene under drought stress
  • organism-icon Arabidopsis thaliana
  • sample-icon 24 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

The CAMTA1 mutant and Col-0 were studied under water and drought condition. The camta1 showed stunted primary root growth under osmotic stress. The expression analysis revealed drought recovery as major indicative pathway along with membrane and chloroplast related protein in camta1 under drought stress. Large number of positively regulated genes were related to osmotic balance, transporters, AP2 and ABA. We used Affymetrix expression analysis to validate the role of CAMTA1 under drought stress.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-40061

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE51626
Role of NPR1 in SA mediated transcription
  • organism-icon Arabidopsis thaliana
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

Affymetrix expression analysis was used to validate the role of NPR1 in SA mediated transcription.

Publication Title

Global nucleosome positioning regulates salicylic acid mediated transcription in Arabidopsis thaliana.

Alternate Accession IDs

E-GEOD-51626

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE14961
Expression data from Arabidopsis Seedlings treated with Salicylic Acid
  • organism-icon Arabidopsis thaliana
  • sample-icon 5 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

Disease resistance is associated with a plant defense response that involves an integrated set of signal transduction pathways. Gene Expression studies were performed using Arabidopsis wild type seedlings treated with and without salicylic acid (SA). In this study we examined pathogenesis related genes are upregulated.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-14961

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon SRP159482
Arabidopsis thaliana Transcriptome or Gene expression
  • organism-icon Arabidopsis thaliana
  • sample-icon 9 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 4000

Description

whole genomic transcriptome analysis of wild type (Col-0) and suvh5 mutant

Publication Title

No associated publication

Alternate Accession IDs

None

Sample Metadata Fields

Sex, Specimen part, Disease, Disease stage, Cell line, Treatment

View Samples
accession-icon GSE112389
Vitis Myb14 confer cold and drought tolerance by mediated nsLTP genes expression and ABA signaling passway in arabidopsis
  • organism-icon Arabidopsis thaliana
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

The growth and fruit quality of grapevine are widely affected by abnormal climatic conditions such as extreme temperature. But how grapevine responds to cold stress is still largely unknown. Here we found that VaMyb14, a member of R2R3 Myb transcription factor family, was up-regulated dramatically during cold, drought and salinity treatments in Vitis amurensis, a cold and drought-hardiness wild Vitis species. Overexpression VaMyb14 in Arabidopsis increased antioxidant enzyme activity, especially POD activity, than that of the wild type and decreased the MDA content. A series of ABA metabolism and signal transduction genes in transgenic Arabidopsiswere were up-regulated in microarry results, including several nsLTPs, PP2Cs, RD29B, COR78 and other structural genes, suggesting that VaMyb14 not only affect the ABA signaling pathways, but also activates the CBF-COR independent nsLTP genes. Collectively, these results illustrate that Vitis Myb14 could represent a node of convergence regulating grapevine stress responses, including improve defence induced phytoalexin resveratrol against necrotrophic as well as drought and/or cold stress tolerance, highlighting Myb14 as a potential gene resource in future grapevine breeding.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-112389

Sample Metadata Fields

Specimen part, Treatment

View Samples
accession-icon GSE72050
Expression of Vitis amurensis NAC26 in Arabidopsis enhances drought tolerance by modulating jasmonic acid synthesis
  • organism-icon Arabidopsis thaliana
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

The growth and fruit quality of grapevine are widely affected by abnormal climatic conditions such as water deficit. But how grapevine responds to drought stress is still largely unknown. Here we found that VaNAC26, a member of NAC transcription factor family, was up-regulated dramatically during cold, drought and salinity treatments in Vitis amurensis, a cold and drought-hardiness wild Vitis species. Ectopic overexpression of VaNAC26 enhanced the drought and salt tolerances in transgenic Arabidopsis. Higher activities of antioxidant enzymes and the lower concentration of H2O2 and O2- were found in VaNAC26-OE lines than in wild type plants under drought stress. These results indicate that the reactive oxygen species (ROS) scavenging was enhanced by VaNAC26 in transgenic lines. Microarray based transcriptome analysis reveals that genes related to jasmonic acid (JA) synthesis and signaling were up-regulated in VaNAC26-OE lines under both normal and drought conditions. VaNAC26 showed a specific binding ability on NACRS motif, which was broadly existent in the promoter regions of up-regulated genes in transgenic lines. Endogenous JA content was found increased obviously in VaNAC26-OE-2/3 lines. Our data suggests that VaNAC26 responds to abiotic stresses and may enhance the drought tolerance by transcriptional regulation of JA synthesis in Arabidopsis.

Publication Title

Expression of Vitis amurensis NAC26 in Arabidopsis enhances drought tolerance by modulating jasmonic acid synthesis.

Alternate Accession IDs

E-GEOD-72050

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE57542
Expression data measured by Nanostring and microarray of monocyte-derived dendritic cells from healthy individuals stimulated with LPS, influenza, or IFN-beta, or left unstimulated
  • organism-icon Homo sapiens
  • sample-icon 228 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Common genetic variants modulate pathogen-sensing responses in human dendritic cells.

Alternate Accession IDs

E-GEOD-57542

Sample Metadata Fields

Sex, Age, Race, Subject

View Samples
...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

Powered by Alex's Lemonade Stand Foundation

Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

BSD 3-Clause LicensePrivacyTerms of UseContact
Version 1.42.67-hotfix - .0.0