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accession-icon SRP112706
C.elegans Single-cell RNA-seq
  • organism-icon Caenorhabditis elegans
  • sample-icon 1137 Downloadable Samples
  • Technology Badge IconIon Torrent Proton

Description

Single-cell Transcriptome study on different developmental stages of C.elegans

Publication Title

No associated publication

Alternate Accession IDs

None

Sample Metadata Fields

Sex, Specimen part

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accession-icon SRP013299
Massive parallel single cell RNA Sequencing of human embryos reveals novel dynamic changes across development stages
  • organism-icon Homo sapiens
  • sample-icon 19 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

Preimplantation human embryonic development is a highly dynamic cellular and molecular process, the correct execution of which is critical for successful development to occur. However the mechanism of this event remains largely unknown due to the scarcity of the material, legal restraints and limited techniques to faithfully analyze small amounts of samples. The development of single cell RNA-seq technology to measure gene expression at single cell levels opens new avenues for investigations into preimplantation human embryonic development.

Publication Title

No associated publication

Alternate Accession IDs

None

Sample Metadata Fields

No sample metadata fields

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accession-icon SRP099377
RED-ML: a novel, effective RNA editing detection method based on machine learning
  • organism-icon Homo sapiens
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon

Description

To develop a highly accurate, speedy and general-purpose tool for RNA editing detection using RNA-seq data

Publication Title

No associated publication

Alternate Accession IDs

None

Sample Metadata Fields

No sample metadata fields

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

Powered by Alex's Lemonade Stand Foundation

Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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