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accession-icon GSE22176
Vitamin D and Gene Expression
  • organism-icon Homo sapiens
  • sample-icon 78 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

A ChIP-seq defined genome-wide map of vitamin D receptor binding: associations with disease and evolution.

Alternate Accession IDs

E-GEOD-22176

Sample Metadata Fields

Cell line, Time

View Samples
accession-icon GSE22174
Vitamin D and Gene Expression [A690]
  • organism-icon Homo sapiens
  • sample-icon 54 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

Genome-wide expression analysis of hapmap lymphoblastoid and ENCODE project cell lines stimulated with calcitriol

Publication Title

A ChIP-seq defined genome-wide map of vitamin D receptor binding: associations with disease and evolution.

Alternate Accession IDs

E-GEOD-22174

Sample Metadata Fields

Cell line, Time

View Samples
accession-icon GSE22172
Vitamin D and Gene Expression [A589]
  • organism-icon Homo sapiens
  • sample-icon 24 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

Genome-wide expression analysis of hapmap lymphoblastoid and ENCODE project cell lines stimulated with calcitriol and/or estrogen

Publication Title

A ChIP-seq defined genome-wide map of vitamin D receptor binding: associations with disease and evolution.

Alternate Accession IDs

E-GEOD-22172

Sample Metadata Fields

Cell line, Time

View Samples
accession-icon SRP201041
Arabidopsis thaliana cultivar:Col. Raw sequence reads
  • organism-icon Arabidopsis thaliana
  • sample-icon 2 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

To investigate the effect of the expression of YlDGAT2 gene on transcriptome of Arabidopsis

Publication Title

No associated publication

Alternate Accession IDs

None

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE17302
IFN-mediated gene expression patterns
  • organism-icon Homo sapiens
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133A 2.0 Array (hgu133a2)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-17302

Sample Metadata Fields

Specimen part, Subject, Time

View Samples
accession-icon GSE13046
Microarray analysis of Huh7 cells treated with IFNa2, OSM or IFNa2 combined with OSM
  • organism-icon Homo sapiens
  • sample-icon 16 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133A 2.0 Array (hgu133a2)

Description

OSM increases the antiviral effect of IFN in Huh7 cells infected with hepatitis A virus (HAV) or HCV replicon and synergizes with IFN in the induction of antiviral genes

Publication Title

Oncostatin M enhances the antiviral effects of type I interferon and activates immunostimulatory functions in liver epithelial cells.

Alternate Accession IDs

E-GEOD-13046

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE17301
The effect of IFN on human CD8 T cells_with other concomitant signals
  • organism-icon Homo sapiens
  • sample-icon 15 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133A 2.0 Array (hgu133a2)

Description

IFN alpha mediated gene expression pattern. The effect of IFN alpha on human CD8 T cells responding to antigen (signal 1) and costimulatory signals (signal 2) provided by beads coated with anti-CD3 and anti-CD28 mAbs.

Publication Title

Effects of IFN-α as a signal-3 cytokine on human naïve and antigen-experienced CD8(+) T cells.

Alternate Accession IDs

E-GEOD-17301

Sample Metadata Fields

Specimen part, Subject, Time

View Samples
accession-icon GSE17299
Direct effects of IFN on human CD8 T cells_without any other concomitant signals
  • organism-icon Homo sapiens
  • sample-icon 3 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133A 2.0 Array (hgu133a2)

Description

IFN-mediated gene expression pattern. Direct effects of IFN on human CD8 T cells without any other concomitant signal.

Publication Title

No associated publication

Alternate Accession IDs

E-GEOD-17299

Sample Metadata Fields

Specimen part, Time

View Samples
accession-icon E-ATMX-30
Transcription profiling by array of Arabidopsis mutant for AtMYB44 or overexpressing AtMYB44 under the control of the 35S promoter after treatment with NaCl
  • organism-icon Arabidopsis thaliana
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

screening of AtMYB44-responsive genes under 250mM NaCl treatment

Publication Title

Overexpression of AtMYB44 enhances stomatal closure to confer abiotic stress tolerance in transgenic Arabidopsis.

Alternate Accession IDs

None

Sample Metadata Fields

Compound

View Samples
accession-icon E-ATMX-4
Transcription profiling of wild type and JMT over-expressing Arabidopsis plants
  • organism-icon Arabidopsis thaliana
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis Genome Array (ag)

Description

Effect of JMT overexpression in global gene expression

Publication Title

Complement analysis of xeroderma pigmentosum variants.

Alternate Accession IDs

None

Sample Metadata Fields

No sample metadata fields

View Samples
...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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