github link
Accession IconSRP131256

Transcriptome analysis of isoxaben-induced loss of cell wall integrity in Arabidopsis nia1/2 mutant

Organism Icon Arabidopsis thaliana
Sample Icon No Downloadable Samples
Technology Badge IconNextSeq 500

Submitter Supplied Information

Description
Plant cell walls maintain their functional integrity during growth, defense and turgor generation through a dedicated cell wall integrity (CWI) maintenance mechanism. Upon detection of integrity impairment due to cell wall damage (CWD) compensatory responses are activated to maintain CWI. Responses include production of salicylic acid (SA), jasmonic acid (JA) and lignin as well as growth inhibition. Here we investigated the processes responsible for inducing growth inhibition upon CWD in Arabidopsis thaliana seedlings. Genetic studies implicated NITRATE REDUCTASE1 2 (NIA1 2) in the response to CWD. RNAseq-based transcriptomics showed that nearly all the CWD-induced transcript changes detectable in Col-0 were absent in nia1 2 seedlings. Overall design: Both genotypes (Col-0 and nia1/2) were treated with either isoxaben or DMSO (mock). Three replicates of Col-0 samples and two replicates of nia1/2 samples were analyzed.
PubMed ID
No associated PubMed ID
Publication Title
No associated publication
Total Samples
10
Submitter’s Institution
No associated institution
Authors
No associated authors
Alternate Accession IDs

Samples

Show of 0 Total Samples
Filter
Add/Remove
Accession Code
Title
Specimen part
Treatment
Subject
Processing Information
Additional Metadata
No rows found
Loading...