Survey of cryptic unstable transcripts in yeast

We sequenced both the stable (WT) and unstable (rrp6delta) transcriptomes of three S.cerevisiae strains: S288c, S1278b, JAY291 and the S.paradoxus strain N17 for de novo annotation of cryptic unstable transcripts (CUTs). Doing so we have greatly expanded on previous CUTs which were limited to the S.cerevisiae strain S288c and have provided the first assessment of CUT expression conservation in yeast Overall design: Examination of polyadenylated RNA populations between wildtype and nuclear exosome mutant rrp6delta yeast cells in biological replicates

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Vera JM, Dowell RD