Gene expression analysis of BRD4 knockdown in HT-29 and HCT116 cells

SRP063978

Homo sapiens

18 Downloadable Samples

Illumina HiSeq 2000

Submitter Supplied Information

Description

RNAseq is performed (50bp single end reads) on HT-29 and HCT-116 cell lines utilizing two independent shRNAs against BRD4 and a non-targeting control shRNA (NTC) Overall design: Examination of transcriptomic changes after knockdown of BRD4

PubMed ID

26752646

Publication Title

CCAT1 is an enhancer-templated RNA that predicts BET sensitivity in colorectal cancer.

Total Samples

Submitter’s Institution

No associated institution

Authors

McCleland ML, Mesh K, Lorenzana E, Chopra VS, Segal E, Watanabe C, Haley B, Mayba O, Yaylaoglu M, Gnad F, Firestein R

Source Repository

Sequence Read Archive (SRA)

Alternate Accession IDs

GSE73317

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