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Accession IconSRP042159

Marine Microbial Eukaryote Transcriptome Sequencing Project

Organism Icon Bicosoecida sp. cb-2014, Dinobryon, Alexandrium fundyense, Amphora coffeiformis, Cyclophora tenuis, Amphidinium carterae, Pseudo-nitzschia fraudulenta, Perkinsus marinus, Goniomonas, Scrippsiella hangoei, Corethron hystrix, Skeletonema costatum, Nitzschia, Cryptomonas paramecium, Guillardia theta, Ditylum brightwellii, Picocystis salinarum, Phaeomonas parva, Dunaliella tertiolecta, Florenciella, Florenciella parvula, Apocalathium aciculiferum, Chaetoceros affinis, Chaetoceros curvisetus, Chlamydomonas leiostraca, Chlamydomonas chlamydogama, Akashiwo sanguinea, Gymnodinium catenatum, Striatella unipunctata, Astrosyne radiata, Rhodosorus marinus, Odontella aurita, Cylindrotheca closterium, Eutreptiella gymnastica, Palpitomonas bilix, Prymnesium parvum, Acanthoeca, Helicotheca tamesis, Uncultured eukaryote, Thalassiosira oceanica, Anophryoides haemophila, Chrysoreinhardia, Aplanochytrium stocchinoi, Blepharisma japonicum, Conticribra weissflogii, Micromonas, Tetraselmis astigmatica, Geminigera cryophila, Myrionecta rubra, Dinophysis acuminata, Pyrodinium bahamense, Amoebophrya sp., Alexandrium catenella, Rhizosolenia setigera, Thalassionema frauenfeldii, Triparma pacifica, Pseudo-nitzschia delicatissima, Sorites sp., Chlorarachnion reptans, Protoceratium reticulatum, Togula jolla, Polarella glacialis, Vannella sp. cb-2014, Vannella, Ochromonas, Strombidinopsis, Trichosphaerium, Filamoeba nolandi, Pessonella, Pelagomonas calceolata, Skeletonema dohrnii, Aplanochytrium, Karenia brevis, Skeletonema marinoi, Paraphysomonas imperforata, Percolomonas cosmopolitus, Prorocentrum minimum, Thalassiosira rotula, Mesodinium pulex, Alexandrium tamarense, Tiarina fusa, Heterosigma akashiwo, Pseudo-nitzschia arenysensis, Tetraselmis striata, Leptocylindrus aporus, Leptocylindrus danicus, Goniomonas pacifica, Pteridomonas danica, Prymnesium polylepis, Chrysochromulina rotalis, Scrippsiella trochoidea, Sexangularia sp. cb-2014, Euplotes focardii, Skeletonema menzelii, Pelagococcus subviridis, Extubocellulus spinifer, Aristerostoma, Fragilariopsis kerguelensis, Thalassiosira antarctica, Rhodella violacea, Amphiprora, Amorphochlora amoebiformis, Paramoeba atlantica, Paramoeba aestuarina, Chaetoceros sp., Alexandrium monilatum, Condylostoma magnum, Isochrysis galbana, Platyophrya macrostoma, Euplotes harpa, Pseudokeronopsis, Corethron pennatum, Proboscia alata, Noctiluca scintillans, Norrisiella sphaerica, Dactyliosolen fragilissimus, Chlamydomonas euryale, Vaucheria litorea, Perkinsus chesapeaki, Asterionellopsis glacialis, Heterocapsa rotundata, Favella ehrenbergii, Strombidinopsis acuminata, Durinskia baltica, Crustomastix stigmatica, Prasinoderma coloniale, Chroomonas cf. mesostigmatica, Rhodomonas lens, Tetraselmis chuii, Schmidingerella taraikaensis, Oxyrrhis marina, Litonotus pictus, Alexandrium margalefii, Thalassiosira minuscula, Prasinococcus capsulatus, Thoracosphaera heimii, Emiliania huxleyi, Chattonella subsalsa, Ostreococcus mediterraneus, Bathycoccus prasinos, Lotharella oceanica, Aureoumbra lagunensis, Protocruzia adherens, Proboscia inermis, Tryblionella compressa, Chaetoceros neogracilis, Kryptoperidinium foliaceum, Thraustochytrium sp., Pseudo-nitzschia australis, Dolichomastix tenuilepis, Stephanopyxis turris, Lotharella globosa, Bigelowiella natans, Strombidium rassoulzadegani, Polytomella parva, Mayorella, Gymnochlora, Strombidium inclinatum, Debaryomyces hansenii, Alveolata, Chromera velia, Gloeochaete wittrockiana, Compsopogon caeruleus, Cafeteria roenbergensis, Hemiselmis andersenii, Heterocapsa triquetra, Porphyridium aerugineum, Thalassiosira gravida, Alexandrium minutum, Trieres chinensis, Coccolithus braarudii, Vexillifera, Rosalina, Crypthecodinium cohnii, Amphidinium massartii, Gambierdiscus australes, Stygamoeba regulata, Chaetoceros debilis, Thalassiothrix antarctica, Thalassionema nitzschioides, Stereomyxa ramosa, Grammatophora oceanica, Skeletonema grethae, Skeletonema japonicum, Lankesteria abbotti, Minchinia chitonis, Pyramimonas parkeae, Nephroselmis pyriformis, Uronema
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Technology Badge IconIllumina Genome Analyzer IIx, Illumina HiSeq 2000

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Description
The Marine Microbial Eukaryote Transcriptome Sequencing Project was a collaboration between the National Center for Genome Resources, the Gordon and Betty Moore Foundation's Marine Microbiology Initiative, and the international marine microbial eukaryote research community to sequence the transcriptomes of approximately 700 samples from hundreds of diverse organisms. Marine microbial eukaryotes are found in all major eukaryotic branches of the evolutionary tree. They perform a diverse range of functions in marine ecosystems, including photosynthesis, predation, and parasitism. Despite the great abundance of microeukaryotes in the ocean, their importance as absorbers of carbon dioxide and their critical contribution to marine food webs (among many ecological roles), the gene content of these microorganisms is only beginning to be explored because their genomes can be structurally complex and can be many gigabases in size. This program was intended to increase the research community's baseline of scientific knowledge by creating catalogs of genes that suggest how these organisms thrive in diverse marine habitats and how they influence marine ecosystems, biogeochemical cycles, and the composition of the atmosphere. Transcriptome datasets are complex and should be approached with awareness, especially in light of the very deep Illumina sequencing used to generate these data. While many researchers attempted to provide axenic and uni-algal total RNA extracts for sequencing, it did not always turn out to be that way. The deep Illumina sequencing may have occasionally picked up very low levels of non-target RNA, and low levels of bacteria may have been present but not known to the laboratory that provided the sample. For additional project information, details about the varied samples, and data, including transcriptome assemblies and annotations, please see: http://marinemicroeukaryotes.org/ and http://camera.calit2.net/mmetsp/.
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