The transcriptome in BmN4 cell line

DRP000552

Bombyx mori

No Downloadable Samples

Illumina Genome Analyzer IIx

Submitter Supplied Information

Description

The silkworm ovary-derived BmN4 cell line is an emerging model for studying germ line piRNA pathway because BmN4 cell line retains germ line piRNA pathway. piRNAs are derived from piRNA precursors transcribed from genomic piRNA clusters. To date, the chromatin landscape for piRNA clusters and how piRNA precursor transcription is regulated are poorly understood. In this study, we analyzed transcriptome, transcription start sites, and chromatin modifications of BmN4 cell line.

PubMed ID

23258708

Publication Title

The comprehensive epigenome map of piRNA clusters.

Total Samples

Submitter’s Institution

Laboratory of Insect Genetics and Biosciences, Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, University of Tokyo

Authors

Kawaoka S, Hara K, Shoji K, Kobayashi M, Shimada T, Sugano S, Tomari Y, Suzuki Y, Katsuma S

Source Repository

Sequence Read Archive (SRA)

Alternate Accession IDs

None

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