github link Compendia packages the data processed by pipelines for flexible and broad use by computational biologists and data scientists


Normalized Compendia

Normalized Compendia are the collection of all the samples available on, aggregated and normalized by species.

Fetching Normalized Compendia

The compendium is created by aggregating all samples from a species, removing samples and genes with too many missing values, imputing missing values with SVD impute. The final step is quantile normalization.
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Data scientists and computational biologists can use species compendia to quickly construct training and testing sets and extract features from a diverse set of biological contexts and conditions.

Examples coming soon

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